PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00003557_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 259aa    MW: 29869.4 Da    PI: 4.692
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00003557_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1423e-13118245189
                              FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk............................ 47 
                                       kfY  YA  vGFs r  k+ k   +  + + +r ++Csk+g++++  kk                            
  FANhyb_icon00003557_a.1.g00001.1 118 KFYAYYAFVVGFSRRCFKHDKAviNGVECVRRRAWCCSKQGYEDSAAKKkrkkvyetdklvteeaanekeeecedat 194
                                       6***************999999544445688999*********999888899************************* PP

                              FAR1  48 ........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                                                +++ r  + +rtgC+a ++v++++ + ++ev +++ +HnH+l
  FANhyb_icon00003557_a.1.g00001.1 195 tlnkkkkkMKTALRGIKYSRTGCEAVFQVRLNRrTMEYEVVSFVPDHNHDL 245
                                       9976544333333466789*************999**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-11118245IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDDGVEMDET DESGLRFSDE KYHDIVISAE DEDCLFEDAG KDTLEIMEDP VILIEDEEVG  60
RDKSDEHGNS KSVGADDITD ETIFSSEWYA ALKGKNMKLL RFEDVKDIIF SSLAEADKFY  120
AYYAFVVGFS RRCFKHDKAV INGVECVRRR AWCCSKQGYE DSAAKKKRKK VYETDKLVTE  180
EAANEKEEEC EDATTLNKKK KKMKTALRGI KYSRTGCEAV FQVRLNRRTM EYEVVSFVPD  240
HNHDLPNRMR DSFYDLAGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147169RRRAWCCSKQGYEDSAAKKKRKK
2165169KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292007.11e-145PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2568623